Biomedical Informatics and Technologies (BIT)

Mission

The mission of the Biomedical Informatics and Technologies group (BIT) is to contribute to the scientific advances in ICT for translational health, through the study of algorithmic questions and computational solutions inspired by and related to biological and biomedical problems. We are in a privileged position to explore future healthcare scenarios working in R&D towards personalized medicine, where treatments are shaped for each individual considering its multiple dimensions, from molecular profiling to better clinical tools for diagnostic and treatments.

Members (81)

Adriano Gomes Adriano Gomes PhD Student Alexandra Queirós Alexandra Queirós Coordinator Professor Ana Isabel Graça Ana Isabel Graça PhD Student Ana Maria Tomé Ana Maria Tomé Associate Professor Ana Patrícia Rocha Ana Patrícia Rocha Researcher Ana Rita Teixeira Ana Rita Teixeira Adjunct Professor Ana Rita Valente Ana Rita Valente Adjunct Professor André Rouco André Rouco PhD Student António Sousa Pereira António Sousa Pereira Full Professor António Teixeira António Teixeira Full Professor Arnaldo Pereira Arnaldo Pereira Former PhD Student Augusto Silva Augusto Silva Associate Professor Beny Rubinstein Beny Rubinstein PhD Student Carlos Costa Carlos Costa Associate Professor w/ Habilitation Catarina Oliveira Catarina Oliveira Adjunct Professor Daniela Silva Pais Daniela Silva Pais PhD Student David Bastos David Bastos Former PhD Student Eduardo Pinho Eduardo Pinho Former PhD Student Ellen Cristine Hirose Pereira Nery Ellen Cristine Hirose Pereira Nery PhD Student Emanuel Matos Emanuel Matos Former PhD Student Fábio Barros Fábio Barros PhD Student Fernanda Brito Correia Fernanda Brito Correia Former PhD Student Francisco Vaz Francisco Vaz Full Professor Frederico Baptista Frederico Baptista PhD Student Gabriel Silva Gabriel Silva Former PhD Student Gonçalo Teixeira dos Santos Gonçalo Teixeira dos Santos PhD Student Helio Pesanhane Helio Pesanhane PhD Student Ilídio Oliveira Ilídio Oliveira Assistant Professor Jéssica Tavares Jéssica Tavares Former PhD Student Joana Dias Joana Dias PhD Student João Manuel Silva João Manuel Silva Former PhD Student João Miguel Andrade João Miguel Andrade PhD Student João Rafael Almeida João Rafael Almeida Assistant Professor Joaquim Salgueiro dos Santos Joaquim Salgueiro dos Santos Former PhD Student Joel Arrais Joel Arrais Associate Professor Jorge Miguel Silva Jorge Miguel Silva Assistant Researcher Jorge Silva Marques Jorge Silva Marques PhD Student José Costa Gameiro José Costa Gameiro PhD Student José Joaquim Alvarelhão José Joaquim Alvarelhão Former PhD Student José Luís Oliveira José Luís Oliveira Full Professor José Maria Fernandes José Maria Fernandes Assistant Professor Júlia Ramos Júlia Ramos PhD Student Júlio Castro Lopes Júlio Castro Lopes PhD Student Komalben Kukadiya Komalben Kukadiya PhD Student Luciana Albuquerque Luciana Albuquerque Former PhD Student Luís Bastião Silva Luís Bastião Silva Assistant Professor Luís Casanova Afonso Luís Casanova Afonso PhD Student Luís Gomes Batista Luís Gomes Batista PhD Student Luís Jesus Luís Jesus Associate Professor w/ Habilitation Marco António Loureiro Marco António Loureiro PhD Student Mário Rodrigues Mário Rodrigues Coordinator Professor Micael Pedrosa Micael Pedrosa Former PhD Student Miguel Carvalho Miguel Carvalho PhD Student Miguel Oliveira e Silva Miguel Oliveira e Silva Assistant Professor Milton Santos Milton Santos Adjunct Professor Nelson Rocha Nelson Rocha Full Professor Nuno Almeida Nuno Almeida Researcher Nuno Gomes Nuno Gomes PhD Student Nuno Monteiro Nuno Monteiro PhD Student Pedro Sernadela Pedro Sernadela Former PhD Student Pietro Merlin Pietro Merlin PhD Student Raquel Paradinha Raquel Paradinha PhD Student Raquel Sebastião Raquel Sebastião Adjunct Professor Richard Adolph Aires Jonker Richard Adolph Aires Jonker PhD Student Rodrigo Diaz Guerrero Rodrigo Diaz Guerrero Former PhD Student Rui Brandão Antunes Rui Brandão Antunes Former PhD Student Rui Fiel Cordeiro Rui Fiel Cordeiro Former PhD Student Rui Lebre Rui Lebre Former PhD Student Rui Pedro Lopes Rui Pedro Lopes Associate Professor Rui Ribeiro Jesus Rui Ribeiro Jesus PhD Student Samuel Silva Samuel Silva Associate Professor Sara Pereira Sara Pereira Former PhD Student Sérgio Matos Sérgio Matos Associate Professor w/ Habilitation Silvia de Francesco Silvia de Francesco Adjunct professor Susana Brás Susana Brás Assistant Professor Syed Tahir Ali Shah Syed Tahir Ali Shah PhD Student Teresa Margarida Pereira Teresa Margarida Pereira PhD Student Tiago Marques Godinho Tiago Marques Godinho Former PhD Student Tiago Melo Almeida Tiago Melo Almeida Former PhD Student Vicente Barros Vicente Barros PhD Student Yubraj Gupta Yubraj Gupta Former PhD Student

Recent Projects (49)

Ongoing

ELIXIR FAIR-FEGA – Accelerating high quality FAIR data deposition in Federated EGA

Ongoing

ELIXIR Fed-A-Crate – Leveraging federated learning and RO-Crates for human genomic data analysis and provenance tracking

Ongoing

GREG – Testing, improving, and co-creating Guidance and Tools for Real World Evidence Generation and Use for Decision-Making in Europe

Create, test and disseminate practical guidance and tools to generate and use real-world evidence (RWE) in the decisions of regulators and health technology assessment (HTA) agencies.

Ongoing

Incite -QMS

Ongoing

VITALITY – Tecnologia inteligente e versátil para uma vida ativa nas casas de hoje / Versatile Intelligent Technology for Active Living in Today’s Homes

Tecnologia inteligente e versátil para uma vida ativa nas casas de hoje / Versatile Intelligent Technology for Active Living in Today’s Homes

Ongoing

BioChef SIG – Browser First Federated Genomics Toolkit

Internal IEETA grant to develop the browser first core of BioChef, a federated genomics toolkit where bioinformatics tools run in the browser through WebAssembly, and to prepare its execution next to protected data.

Ongoing

PARCERIA – Plataforma de Assistentes Colaborativos de Inteligência Artificial

O projeto PARCERIA tem como objetivos desenvolver uma plataforma de agentes IA genérica e modular, adaptável a diferentes domínios de aplicação, e desenvolver e validar assistentes colaborativos para duas áreas de aplicação, ensino e análise de dados de saúde. O…

Ongoing

Next2Heat SP8 – Integrated Multimodal interaction solution for residential environments

Next2Heat main objective is to develop next‑generation efficient, sustainable and safer heating technologies for buildings, including advanced electric heat pumps and low‑impact gas systems.

Ongoing

TIME4LUNG – Early lung cancer detection

Develop, validate and prepare the clinical deployment of Optomics®, a technology combining photonics, biotechnology and AI to generate lung cancer risk scores from a simple blood sample. About 10 000 high-risk individuals will be recruited in Portuguese hospitals, building a…

Ongoing

Reliability4Photonics – Reliability of Spectroscopy and Imaging based Photonic Technologies for Biomedical Applications

A European network to establish protocols for the standardisation and harmonisation of photonic data (Raman, IR and nonlinear optical imaging) for AI-based modelling, speeding up the translation of photonic technologies from the laboratory to clinical use.

Ongoing

ELIXIR BioChef – A Hybrid Workflow Platform for Privacy-Preserving Federated Analysis

BioChef is a visual workflow builder for genomics that runs bioinformatics tools in the browser with WebAssembly. It offers an intuitive drag-and-drop graphical user interface (GUI) tailored for non-technical users or bioinformaticians who want to visually organize genomics pipelines.

Ongoing

Casa Viva+

Conceptualization and development of novel solutions for a smart home promoting a healthier and dignified life at home.

Ongoing

GDI – Genomic Data Infrastructure

The project is designed to support the European 1+ Million Genomes (1+MG) Initiative. It brings together institutions in 22 countries to provide a cross-border federated network of national genome collections, associated with other relevant data, for advancing data-driven biomedical research…

Completed

S2MovingCity – Monitorizar e Servir uma Cidade em Movimento.

Completed

ACTION – Accessible tourism: Co-creation of Tourism experIence thrOugh Web-based IntelligeNt System

Completed

ACTIVAS – Ambientes Construídos para uma Vida Ativa, Segura e Saudável

Completed

Multimodal physiological indicators of pain

Completed

CAD_FACTS – Coronary Artery Disease Numerical Simulation and Functional Assessment by Advanced Computed Tomograph

Completed

HfPT – Health from Portugal

Completed

EMPA – Emotional Modulation in Pain Assessment // Modulação Emocional na Avaliação da Dor

Completed

HfPT MedGov-AI – Orquestração e Governança de Fornecedores de IA em Imagiologia Médica

Completed

CHHA – Connected Home for Healthy Ageing

CHHA delivered two proof‑of‑concept eHealth solutions that used low‑latency, secure, cloud‑integrated networks to provide scalable and inclusive home‑based digital health services. The project showed how advanced networking technologies could transform remote care and reshape smart‑home health monitoring.

Completed

PRR-equipamento – UID/PRR/00127/2025 – IEETA

Reforçar a capacidade computacional para investigação em IA. Garantir escalabilidade, desempenho e fiabilidade da infraestrutura. Assegurar compatibilidade com frameworks avançadas de ML/DL/IA generativa. Promover comunicação rápida e armazenamento seguro de dados. Manter uma estratégia contínua de atualização tecnológica.

Completed

OLI Health

The project aims the design, technical development, and validation of an innovative solution for the regular monitoring of data related to the health and well-being of the individual. It is intended to develop a technological solution that will allow the…

Completed

AWARE – Enhancing the level of cybersecurity awareness in VET related to digital transformation

Address the increased risks related to a more digitalised world in general, on the individual level and in everyday life, in school, at work, at home, and more specifically, in relation to VET, the risks coming from the digital transformation…

Completed

Prevent2Protect – Coming out of the box: Moving from traditional to virtual procedures to explore prospective memory and contamination

Completed

VADER – Video-conference Analysis to Detect Emotions and Reactions

The implementation of a scalable video communication solution that optimizes resource consumption at the client, network and server levels; The implementation of a sentiment analysis module over video data to provide information concerning the interaction of the participants on a…

Completed

PT2020 Odyssey

Odyssey - Platform for Automated Sensing in Archaeology (https://odyssey.pt) will use image processing and artificial intelligence techniques to detect archaeological sites from data from different sources, automating and complementing human work to improve results, resulting in a disruptive monetizable Geographic…

Completed

PandIA – Management of Pandemic Social Isolation Based on City and Social Intelligence

The project aims to monitor the progression of a disease/pandemic in a geographical area. To achieve this goal, different data sources will be combined, involving healthcare institutions, municipalities, social networks, and public domain websites and datasets.

Completed

TO2 – Non-contact oxygen saturation and temperature stations

Develop and integrate sensors into portable stations for non-contact measurement of physiological parameters indicative of COVID-19, namely decreased oxygen saturation (SpO2) level and high body temperature.

Completed

AAL APH ALARM

APH-Alarm (https://aph-alarm-project.com) is a comprehensive safety solution for people with Aphasia. The aim of the system is to provide alarm messages without the need of speaking or in situations where common emergency triggers are out of reach.

Completed

RH4.0 FeD

The objectives are to develop methods for time series forecasting to predict the number of customers in retail stores hourly, and for automatic sizing and scheduling of teams in a workforce management system. The system is used monthly to assign…

Completed

EHDEN – European Health Data & 
Evidence Network

EHDEN aims to address the current challenges in generating insights and evidence from real-world clinical data at scale, to support patients, clinicians, payers, regulators, governments, and the industry in understanding wellbeing, disease, treatments, outcomes and new therapeutics and devices.(https://www.ehden.eu).

Completed

D4 – Deep Drug Discovery and Deployment

D4 proposes the use of state-of-the-art Deep Learning methods to tackle the challenges identified on each of the initial stages of the drug discovery pipeline. The main contribution was the creation of an improved computational pipeline that uses Deep Learning…

Completed

SmAC – Desenvolvimento de uma solução de descarga inovadora com alta performance de funcionamento e estabilidade

Design, technical development, prototyping and final validation of a new innovative water flushing system that would integrate the toilet and allow multiple functions, including volume and flush flow control, including a wide range of functions related to monitoring and alerts…

Completed

DyNaVoiceR – Dysphonic to Natural Voice Reconstruction

Convert whispered speech into synthetic voiced speech Facilitate human-to-human and human-to-machine communication Reinforce the acoustic signature of the speaker

Completed

VoxSenes: segmental changes and rhythm variations on European Portuguese aging voice

VoxSenes project (http://voxsenes.web.ua.pt/) aims to study the speech changes due to aging at the segmental and suprasegmental levels by analyzing the variation of acoustic and articulatory parameters.

Completed

LLMCP LisPan: Living Lab para Conteúdos e Plataformas de Media


Exploration and deepening of the understanding of the online behavior of individuals, including the phenomena of multitasking and crossmedia media. The project aims to study the use of the Internet and new media in Portugal, using techniques for recording behavior,…

Completed

SmartWalk – Cidades Inteligentes para Cidadãos Sénior Ativos

Initially monitor the physical activity of the elderly who adhere to the initiative and verify that they are complying with the activity recommended by the World Health Organization. If they did not comply, a health professional, assisted by the algorithms…

Completed

BluEyes – Beacons and HCI: making the invisible visible

It is intended to make the invisible visible to blind citizens, improving mobility in the urban transport of Coimbra, visits to the Bordaliana Route in Caldas da Rainha and pedestrian circulation for access to the services of public buildings of…

Completed

SOCA – Smart Open Campus

The main objective of SOCA is to create an open innovation ecosystem where data is gathered from multiple sources, processed, integrated, and made available for applications and users, to create a service sphere able to assist every individual inside it…

Completed

SmartWalk – Smartcities for Active Seniors


SmartWalk aims at increasing the quality of life of elder population by creating tools to monitor and help preserving functional capacities. The increase of elderly population makes a pressing matter the
promotion of healthy aging, with autonomy and independence, and preserving…

Completed

The development of nasal vowels and diphthongs in European Portuguese

Recording and automatic processing of MRI-data to support speech production studies

Completed

NETDIAMOND – NEw Targets in DIAstolic heart failure: from coMOrbidities to persoNalizeD medicine

Heart failure (HF) is a highly prevalent syndrome of impaired cardiac function that constitutes the main cause of hospitalization and disability amongst the elderly, a leading cause of mortality, morbidity and resource consumption. HF with preserved ejection fraction (HFpEF) is…

Completed

MIRMIR: Multimodal Information Retrieval in Medical Imaging Repositories

Investigate new solutions for extracting, merging and searching over multimodal medical imaging data, including text (DICOM metadata and diagnosis reports) and image information.

Completed

SCREEN-DR: Image Analysis and Machine Learning Platform for Innovation in Diabetic Retinopathy Screening

Diabetic retinopathy (DR) is the most prevalent microvascular complication of diabetes mellitus and can lead to irreversible visual loss. Screening programs, based on retinal imaging techniques, are fundamental to detect the disease since the initial stages are asymptomatic. Most of…

Completed

SGH – Smart Green Homes

The project aimed to take advantage of developments in materials science in conjunction with innovative technology integration strategies. In this context, one of the objectives was to explore the integration of home equipment to improve ease of use and efficiency.

Completed

EMIF – European Medical Information Framework

This project combines the topic of generating a common patient health Information Framework (IF) with addressing the two Research Topics (RT’s) Obesity and its metabolic complications and Markers for the development of Alzheimer’s disease (AD) and other dementias. (http://www.emif.eu)

Completed

RD-CONNECT – An integrated platform connecting registries, biobanks and clinical bioinformatics for rare disease research

The RD-Connect Project was a multidisciplinary project that united partners from the EU and beyond to create an integrated global infrastructure for Rare Disease research. It provided the infrastructure to develop three new platforms to improve the study and analysis…