A Hybrid Metagenomic Pipeline for Taxonomic Classification
Lecture Notes in Computer Science, 16050 LNCS, 57–69 DOI Scopus
Publications — Jorge Miguel Silva
← Jorge Miguel Silva · All IEETA publications
2026
6 publicationsA Risk Analysis Tool for Medical Studies
Studies in Health Technology and Informatics, 336, 1607–1608 DOI Scopus
A systematic review and benchmarking of modern metagenomic tools for taxonomic classification
Biochef: a client-side WebAssembly-based workflow builder for genomic data analysis
HYMET: a hybrid metagenomic pipeline for accurate and efficient taxonomic classification
VCFX: A Minimalist, Modular Toolkit for Streamlined Variant Analysis
Lecture Notes in Computer Science, 16051 LNCS, 85–96 DOI Scopus
2025
2 publicationsA Federated Random Forest Solution for Secure Distributed Machine Learning
Proceedings - IEEE Symposium on Computer-Based Medical Systems, 769–774 DOI Scopus
PhenoQC: An integrated toolkit for quality control of phenotypic data in genomic research
2024
5 publicationsA comprehensive study of databases to assess the reliability of metagenomic tools
21st IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2024 DOI Scopus
AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data
BIT.UA at iDPP: Predictive Analytics on ALS Disease Progression Using Sensor Data with Machine Learning
CEUR Workshop Proceedings, 3740, 1401–1411 Scopus
Enhancing metagenomic classification with compression-based features
HealthDBFinder: a question-answering task for health database discovery
Proceedings - IEEE Symposium on Computer-Based Medical Systems, 100–104 DOI Scopus
2023
9 publicationsA FAIR Approach to Real-World Health Data Management and Analysis
Proceedings - IEEE Symposium on Computer-Based Medical Systems, 2023-June, 892–897 DOI Scopus
A Reliable and Secure Method for Sharing Genomic Data
Studies in Health Technology and Informatics, 302, 1071–1072 DOI Scopus
AlcoR: alignment-free simulation, mapping, and visualization of low-complexity regions in biological data
BIT.UA at BioASQ 11B: Two-Stage IR with Synthetic Training and Zero-Shot Answer Generation
CEUR Workshop Proceedings, 3497, 37–59 Scopus
BIT.UA at MedProcNer: Discovering Medical Procedures in Spanish Using Transformer Models with MCRF and Augmentation
CEUR Workshop Proceedings, 3497, 60–72 Scopus
Classifying and discovering genomic sequences in metagenomic repositories
Exploring Kolmogorov Complexity Approximations for Data Analysis: Insights and Applications
IFIP Advances in Information and Communication Technology, 678, 161–174 DOI Scopus
Optimizing Variant Calling for Human Genome Analysis: A Comprehensive Pipeline Approach
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 13920 LNBI, 72–85 DOI Scopus
SecureFASTA: Ensuring privacy and trust when sharing genomic data
Proceedings - IEEE Symposium on Computer-Based Medical Systems, 2023-June, 173–178 DOI Scopus
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