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Last update: [2007-11-11 / 21:21]

Publications

Books

J. L. Oliveira, V. Maojo, F. Martin-Sanchez, and A. S. Pereira, Biological and Medical Data Analysis, Springer, 2005.
N. P. Rocha, F. Ramos, and J. L. Oliveira, Introdução à Informática, Universidade de Aveiro, 1997.

Book Chapters

D. Santos, C. Costa, J. L. Oliveira, and A. Neves, "Alternative lossless compression algorithms in X-ray cardiac images" in Computational Vision and Medical Image Processing, N. J. João Tavares, Ed. London: Taylor & Francis Group, 2008, pp. 143-146.
G. Moura, M. Pinheiro, A. Freitas, J. L. Oliveira, and M. A. Santos, "Computational and Statistical Methodologies for ORFeome Primary Structure Analysis" in Comparative Genomics, Methods in Molecular Biology series, N. Bergman, Ed.: Humana Press, USA., 2007.
C. Costa, A. Silva, and J. L. Oliveira, "Current Perspectives on PACS and a Cardiology Case Study" in Advanced Computational Intelligence Paradigms in Healthcare 2, vol. 65, S. Vaidya, L. C. Jain, and H. Yoshida, Eds.: Springer-Verlag, 2007, pp. 79-108.
C. Costa, A. Silva, J. L. Oliveira, V. Ribeiro, and J. Ribeiro, "A demanding Web-based PACS supported by Web Services technology" in Medical Imaging 2006: PACS and Imaging Informatics, vol. 6145, O. R. Steven C.Horii, Ed., 2006.
C. Costa, J. L. Oliveira, A. Silva, V. Ribeiro, and J. Ribeiro, "Himage: Um Web-PACS inovador para Imagem Cardíaca" in TIC em Biomedicina, vol. 6145, M. G. J. R. Rabunal, N. Pedreira, J. Pereira, Ed. Santiago de Compostela 2005.
C. Costa, A. Silva, J. L. Oliveira, V. Ribeiro, and J. Ribeiro, "Himage PACS: A new approach to storage, integration and distribution of cardiologic images" in Progress in Biomedical Optics and Imaging, vol. 5, H. H. Ratib OM, Ed., 2004, pp. 277-287.
J. L. Oliveira and R. Aguiar, "QoS Negotiation Based on Management Delegates" in Enterprise Information Systems III, J. Filipe, B. Sharp, and P. Miranda, Eds.: Kluwer, 2002, pp. 295-303.
J. Mota, J. L. Oliveira, and F. Ramos, "A Remote Meteorological Data Service Supported on Corba" in Enterprise Information Systems, J. Filipe, Ed.: Kluwer Academic Publishers, 2000.

International Journals

G. Moura, M. Pinheiro, J. Arrais, A. C. Gomes, L. Carreto, A. Freitas, J. L. Oliveira, and M. A. Santos, "Large Scale Comparative Codon-Pair Context Analysis Unveils General Rules that Fine-Tune Evolution of mRNA Primary Structure", PLoS ONE, vol. 2, no. 9, pp. e847, 2007.
J. Arrais, B. Santos, J. Fernandes, L. Carreto, M. A. Santos, and J. L. Oliveira, "GeneBrowser: an approach for integration and functional classification of genomic data", Journal of Integrative Bioinformatics, vol. 4, no. 3, 2007.
M. Pinheiro, V. Afreixo, G. Moura, A. Freitas, M. A. Santos, and J. L. Oliveira, "Statistical, computational and visualization methodologies to unveil gene primary structure features", Methods of Information in Medicine, vol. 45, no. 2, pp. 163-168, 2006.
I. Oliveira, J. L. Oliveira, J. P. Sanchez, V. López-Alonso, F. Martin-Sanchez, V. Maojo, and A. S. Pereira, "Grid requirements for the integration of biomedical information resources for health applications", Methods of Information in Medicine, vol. 44, no. 2, pp. 161-67, 2005.
G. Moura, M. Pinheiro, R. Silva, I. Miranda, V. Afreixo, G. Dias, A. Freitas, J. L. Oliveira, and M. A. Santos, "Comparative context analysis of codon pairs on an ORFeome scale", Genome Biology, vol. 6, no. 3, pp. R28, 2005.
M. Pinheiro, J. L. Oliveira, M. A. S. Santos, H. Rocha, M. L. Cardoso, and L. Vilarinho, "A Computer-based Solution for Screening of Inherited Metabolic Diseases", Journal of Inherited Metabolic Disease, vol. 27, no. Suppl. 1, pp. 4 (Abstract), 2004.
C. Costa, A. Silva, J. L. Oliveira, A. S. Pereira, and V. Ribeiro, "A Multi-service Patient Data Card", Technology and Health Care, vol. 10, no. 6, pp. 462-464, 2002.
C. Costa, A. Silva, J. L. Oliveira, A. S. Pereira, V. Ribeiro, and A. Damasceno, "A Transcontinental Telemedicine Platform for Cardiovascular Ultrasound", Technology and Health Care, vol. 10, no. 6, pp. 460-462, 2002.
C. Costa, A. Silva, J. L. Oliveira, and A. S. Pereira, "A New Access Mechanism to Clinic Data", Technology and Health Care, vol. 9, no. 6, pp. 459-460, 2001.
J. L. Oliveira and J. A. Martins, "A Management Architecture based on Network Topology Information", Journal of Network and Systems Management, vol. 2, no. 4, pp. 401-414, 1994.

National Journals

M. Pinheiro, G. Dias, V. Afreixo, A. Valente, G. Moura, M. A. S. Santos, and J. L. Oliveira, "Sistema bioinformático para análise do mecanismo molecular de descodificação da informação genética", Electrónica e Telecomunicações (UA/DET Journal), vol. 4, no. 1, pp. 88-96, 2003.
V. Roque and J. L. Oliveira, "CORBA, DCOM e JavaRMI - Uma Análise Comparativa", Ingenium, no. 46, pp. 87-91, 2000.
N. P. Rocha, L. M. Pereira, C. Susana, C. Clara, and J. L. Oliveira, "The Portuguese Experiment within the IBCoBN Project", Electrónica e Telecomunicações (UA/DET Journal), vol. 2, no. 6, pp. 696-699, 1999.
R. Martins, S. Bernardo, and J. L. Oliveira, "Interface de Gestão Web para HP OpenView", Electrónica e Telecomunicações (UA/DET Journal), vol. 2, no. 2, pp. 373-380, 1999.
R. P. Lopes and J. L. Oliveira, "Software Agents in Network Management (selected article from ICEIS'99 - 1st International Conference on Enterprise Information Systems)", Sistemas de Informação, no. 10, pp. 59-70, 1999.
R. Aguiar and J. L. Oliveira, "Issues on Internet Evolution and Management (selected article from ICEIS'99 - 1st International Conference on Enterprise Information Systems)", Sistemas de Informação, no. 10, pp. 39-48, 1999.
N. P. Rocha and J. L. Oliveira, "O Ensino de Informática em Licenciaturas de Ciências e Tecnologia", Electrónica e Telecomunicações (UA/DET Journal), vol. 2, no. 1, pp. 5-12, 1997.
R. P. Lopes and J. L. Oliveira, "Redes Ethernet: de 1 Mbit a 1 Gbit", Electrónica e Telecomunicações (UA/DET Journal), vol. 2, no. 1, pp. 47-55, 1997.
J. L. Oliveira, "Network Management Architectures: Overview and Evaluation", Electrónica e Telecomunicações (UA/DET Journal), vol. 1, no. 6, pp. 531-542, 1996.
R. P. Lopes, M. Esteves, J. A. Martins, and J. L. Oliveira, "Modelo de Integração de Aplicações Distribuídas e não Colaborantes", Electrónica e Telecomunicações (UA/DET Journal), vol. 1, no. 4, pp. 377-386, 1995.
F. Pipa, J. L. Oliveira, and J. A. Martins, "Desenvolvimento de um Agente de Monitoração para Redes TCP/IP", Electrónica e Telecomunicações (UA/DET Journal), vol. 1, no. 1, pp. 5-15, 1994.
J. L. Oliveira, J. A. Martins, and J. S. Pinto, "Ethernet Traffic Measurements: A Case Study", Electrónica e Telecomunicações (UA/DET Journal), vol. 1, no. 2, pp. 103-108, 1994.
P. Costa, M. Domingues, J. A. Martins, and J. L. Oliveira, "Monitorização e Visualização de Recursos num Ambiente Distribuído", Electrónica e Telecomunicações (UA/DET Journal), vol. 1, no. 1, pp. 33-40, 1994.

Conferences (Full papers)

D. Polónia, C. Costa, A. Silva, and J. L. Oliveira, "PACS procurement planning and negotiation strategies for regional health institutions in the National Health Service of an EU country", in International Journal of Computer Assisted Radiology and Surgery, Vol 2, Sup 1 (Proceedings of CARS'2007), Berlin, Germany, 2007.
D. Polónia, C. Costa, and J. L. Oliveira, "A Model to Optimize the Use of Imaging Equipment and Human Skills Scattered in Very Large Geographical Areas", in 9th International Conference on Enterprise Information Systems (ICEIS'2007), Madeira, Portugal, 2007.
A. Freitas, J. Duarte, M. Pinheiro, J. L. Oliveira, G. Moura, and M. A. S. Santos, "Homo sapiens versus Pan troglodytes: quão diferentes são?" in Actas do XIV Congresso Nacional da Sociedade Portuguesa de Estatística, Covilhã, Portugal, 2007.
A. Freitas, M. Pinheiro, V. Afreixo, J. Duarte, J. L. Oliveira, G. Moura, and M. A. S. Santos, "A median-based iterative signature algorithm", in Proceedings of the satellite meeting of the 56th session of the International Statistical Institute, Statistics for Data Mining Learning and Knowledge Extraction, Aveiro, Portugal, 2007.
J. Duarte, A. Freitas, M. Pinheiro, J. L. Oliveira, G. Moura, and M. A. S. Santos, "ISA: um algoritmo de bi-classificação?" in Actas do XIV Congresso Nacional da Sociedade Portuguesa de Estatística, Covilhã, Portugal, 2007.
C. Costa, J. L. Oliveira, A. Silva, V. Gama, and J. Ribeiro, "Enhanced PACS to support Demanding Telemedicine and Telework Scenarios", in International Journal of Computer Assisted Radiology and Surgery, Vol 2, Sup 1 (Proceedings of CARS'2007), Berlin, Germany, 2007.
V. Afreixo, A. Freitas, M. Pinheiro, J. L. Oliveira, G. Moura, and M. A. S. Santos, "Exploiting a Biclustering algorithm in ORFeome analysis", in Proceedings of the 2007 VLDB Workshop on Data Mining in Bioinformatics, Vienna, Austria, 2007.
D. Polónia, C. Costa, and J. L. Oliveira, "A PACS based GRID of resources", in 4th International EuroPACS Conference (EuroPACS 2006), Trondheim, Norway, 2006.
D. Polónia, C. Costa, and J. L. Oliveira, "Optimizing PACS and imaging resources", in The XX International Congress of the European Federation for Medical Informatics (MIE'2006), Maastricht, Netherlands, 2006.
G. Dias, J. L. Oliveira, F. Vicente, and F. Martín-Sanchez, "Integrating Medical and Genomic Data: a Sucessful Example for Rare Diseases", in The XX International Congress of the European Federation for Medical Informatics (MIE'2006), Maastricht, Netherlands, 2006.
J. Arrais, D. Polónia, and J. L. Oliveira, "A prospective study on the integration of microarrays data in HIS/ERP", in Biological and Medical Data Analysis (ISBMDA' 2006), Lecture Notes in Computer Science - Volume 4345, Thessaloniki, Greece, 2006.
J. Arrais, J. L. Oliveira, G. Grimes, S. Moodie, K. Robertson, and P. Ghazal, "Microarray data sharing in BioMedicine", in The XX International Congress of the European Federation for Medical Informatics (MIE'2006), Maastricht, Netherlands, 2006.
H. Veiga, T. Pinho, J. L. Oliveira, R. Valadas, P. Salvador, and A. Nogueira, "Active traffic monitoring for heterogeneous environments", in 4th International Conference on Networking (ICN'05), Reunion Island, 2005.
D. Polónia, J. L. Oliveira, and N. P. Rocha, "Overview of information systems training in Portuguese medicine courses", in Health and Medical Informatics Applications - Educational Aspects (EFMI-STC 2005), Athens, Greece, 2005.
D. Polónia and J. L. Oliveira, "Health Information Systems and Telematics: A best of breed evaluation framework for the Portuguese case", in European Health Management Association Annual Conference 2005 (EHMA'2005), Barcelona, Spain, 2005.
D. Polónia, C. Costa, and J. L. Oliveira, "Architecture evaluation for the implementation of a Regional Integrated Electronic Health Record", in The XIX International Congress of the European Federation for Medical Informatics (MIE'2005), Geneve, Switzerland, 2005.
M. Pinheiro, J. L. Oliveira, M. A. S. Santos, H. Rocha, M. L. Cardoso, and L. Vilarinho, "Results of a Biomedical Application in Newborn Screening Programs", in The 3rd European Medical and Biological Engineering Conference (EMBEC'05), Prague, Czech Republic, 2005.
J. L. Oliveira, P. Gonçalves, W. Dziunikowski, J. Wszolek, S. Rasmussen, R. P. Lopes, and V. Roque, "Policy-Based Network Management in an Integrated Mobile Network", in Advanced Industrial Conference on Telecommunications (AICT'2005), Lisbon, Portugal, 2005.
R. P. Lopes, N. Raimundo, M. Varanda, J. L. Oliveira, and V. Roque, "Executable Graphics for PBNM", in Operations and Management in IP-Based Networks (IPOM'2005), Lecture Notes in Computer Science - Volume 3751, Barcelona, Spain, 2005.
P. Gonçalves, J. L. Oliveira, and R. Aguiar, "A WBEM based solution for a 4G network integrated management", in International Conference on Networking and Services (ICNS'2005), Tahiti, French Polynesia, 2005.
A. Freitas, M. Pinheiro, J. L. Oliveira, G. Moura, and M. A. S. Santos, "A New Limiting Distribution for the Statistic Test for the Homogeneity of two Multinomial Populations", in Workshop on Statistics in Genomics and Proteomics, Lisboa, Portugal, 2005.
W. Dziunikowski, J. Wszolek, P. Gonçalves, S. Rasmussen, A. Cuevas, R. P. Lopes, V. Roque, and J. L. Oliveira, "Using CIM Extensions to model Managed Entities in Heterogeneous Networks", in IEEE International Workshop on Management Issues and Challenges in Mobile Computing (MICMC'2005), Nice, France, 2005.
G. Dias, J. L. Oliveira, F. Vicente, and F. Martin-Sanchez, "Integration of Genetic and Medical Information Through a Web Crawler System", in Biological and Medical Data Analysis (ISBMDA' 2005), Lecture Notes in Computer Science - Volume 3745, Aveiro, Portugal, 2005.
C. Costa, J. L. Oliveira, A. Silva, V. Ribeiro, and J. Ribeiro, "A Telemedicine Platform for Cardiovascular Ultrasound", in The XIX International Congress of the European Federation for Medical Informatics (MIE'2005), Geneve, Switzerland, 2005.
C. Costa, J. L. Oliveira, A. Silva, V. Ribeiro, and J. Ribeiro, "Data Management and Visualization Issues in a Fully Digital Echocardiography Laboratory", in Biological and Medical Data Analysis (ISBMDA' 2005), Lecture Notes in Computer Science - Volume 3745, Aveiro, Portugal, 2005.
J. Arrais, L. Silva, M. Rodrigues, L. Carreto, J. L. Oliveira, and M. A. S. Santos, "Why Another Microarrays LIMS", in The 3rd European Medical and Biological Engineering Conference (EMBEC'05), Prague, Czech Republic, 2005.
F. Vicente, I. Hermosilla, M. García-Remesal, D. Pérez del Rey, B. Romero, I. Oliveira, J. L. Oliveira, A. S. Pereira, and F. Martin-Sanchez, "Infogenmed: Un Laboratorio Virtual para la Integración de Información Clínica y Genética en Aplicaciones Médicas", in VII Congreso Nacional de Informático de la Salud (Inforsalud'2004), Madrid, Spain, 2004.
H. Veiga, T. Pinho, J. L. Oliveira, R. Valadas, P. Salvador, and A. Nogueira, "Implementação, validação e exploração do sistema de monitorização activa OWAMP", in 7ª Conferência de Redes de Computadores (CRC'2004), Leiria, Portugal, 2004.
V. Roque, R. P. Lopes, and J. L. Oliveira, "Utilização de Políticas em Gestão de Redes e Sistemas de Informação", in 5ª Conferência da Associação Portuguesa de Sistemas de Informação (CAPSI'2004), Lisbon, 2004.
V. Roque, R. P. Lopes, and J. L. Oliveira, "Towards Transactional Integrity Issues in Policy Based Network Management Systems", in 7ª Conferência de Redes de Computadores (CRC'2004), Leiria, Portugal, 2004.
V. Roque, J. L. Oliveira, and R. P. Lopes, "Solving Transactional Control in Current Management Frameworks", in 6th International Conference on Enterprise Information Systems (ICEIS'2004), Porto, Portugal, 2004.
D. Polónia, J. L. Oliveira, and M. O. Duarte, "Information Systems (IS) in the Third and Fourth Generation Mobile Operator", in 5ª Conferência da Associação Portuguesa de Sistemas de Informação (CAPSI'2004), Lisbon, 2004.
D. Polónia, I. Oliveira, and J. L. Oliveira, "A Business Process Model for Public Health Information Systems: A Governmental Perspective", in 6th International Conference on Enterprise Information Systems (ICEIS'2004), Porto, Portugal, 2004.
M. Pinheiro, J. L. Oliveira, M. A. S. Santos, H. Rocha, M. L. Cardoso, and L. Vilarinho, "NeoScreen: A software application for MS/MS newborn screening analysis", in Biological and Medical Data Analysis (ISBMDA'2004), Lecture Notes in Computer Science - Volume 3337, Barcelona, Spain, 2004.
I. Oliveira, J. L. Oliveira, F. Martin-Sanchez, V. Maojo, and A. S. Pereira, "Biomedical information integration for health applications with Grid: a requirements perspective", in Healthgrid 2004, Clermont-Ferrand, France, 2004.
J. L. Oliveira, G. Dias, I. Oliveira, P. Rocha, I. Hermosilla, F. Vicente, I. Spiteri, F. Martin-Sanchez, and A. S. Pereira, "DiseaseCard: a web-based tool for the collaborative integration of genetic and medical information", in Biological and Medical Data Analysis (ISBMDA'2004), Lecture Notes in Computer Science - Volume 3337, Barcelona, Spain, 2004.
R. P. Lopes, J. L. Oliveira, and V. Roque, "Gestão de Redes com Base em Políticas - Uma Abordagem Prática", in 7ª Conferência de Redes de Computadores (CRC'2004), Leiria, Portugal, 2004.
M. García-Remesal, V. Maojo, H. Billhardt, J. Crespo, R. Alonso-Calvo, D. Pérez, F. Martín, V. López, J. Sánchez, F. Vicente, M. García-Rojo, A. Gómez de la Cámara, A. Sousa, J. L. Oliveira, I. Oliveira, M. Santos, and A. Babic, "Designing New Methodologies for Integrating Biomedical Information in Clinical Trials", in EuroMISE 2004, Prague, Czech Republic, 2004.
C. Costa, J. L. Oliveira, and A. Silva, "E-Services in Mission-Critical Organizations: Identification Enforcement", in 6th International Conference on Enterprise Information Systems (ICEIS'2004), Porto, Portugal, 2004.
V. Roque, J. L. Oliveira, and R. P. Lopes, "Visual Composition of Management Policies", in 4rd Conference on Telecommunications (ConfTele'2003), Aveiro, Portugal, 2003.
V. Roque, J. L. Oliveira, and R. P. Lopes, "Controlo Transaccional em Sistemas de Gestão de Redes por Políticas", in 6ª Conferência sobre Redes de Computadores (CRC'2003), Bragança, Portugal, 2003.
V. Roque, J. L. Oliveira, and R. P. Lopes, "Policies Composition Through Graphical Components", in IEEE 5th International Conference on Enterprise Information Systems (ICEIS'2003), Angers, France, 2003.
N. P. Rocha, P. Trigueiros, A. Costa, A. Mouro, T. Silva, and J. L. Oliveira, "NETMAPA - Sistema Móvel de Apoio à Orientação e Mobilidade de Pessoas com Deficiência Visual", in 4º Congresso Luso Moçambicano de Engenharia, Maputo, Mozambique, 2003.
I. Oliveira, J. L. Oliveira, M. Santos, F. Martin-Sanchez, and A. S. Pereira, "On the requirements of biomedical information tools for health applications: the INFOGENMED case study", in 7th Portuguese Conference on Biomedical Engineering (BioEng’2003), Lisbon, Portugal, 2003.
R. P. Lopes and J. L. Oliveira, "Delegation of Expressions for Distributed SNMP Information Processing", in IFIP/IEEE International Symposium on Integrated Network Management (IM'2003), Colorado, USA, 2003.
R. P. Lopes and J. L. Oliveira, "Development of Management Entities for Heterogeneous Scenarios", in 4rd Conference on Telecommunications (ConfTele'2003), Aveiro, Portugal, 2003.
R. P. Lopes and J. L. Oliveira, "AgentAPI: An API for the Development of Managed Agents", in IEEE 5th International Conference on Enterprise Information Systems (ICEIS'2003), Angers, France, 2003.
R. P. Lopes and J. L. Oliveira, "Practical Management based on SNMP Expressions", in IEEE 5th International Conference on Enterprise Information Systems (ICEIS'2003), Angers, France, 2003.
R. P. Lopes and J. L. Oliveira, "A Mobile Agent Navigation Manager", in 5th International Workshop on Mobile Agents for Telecomunication Applications (MATA'2003), Marrakech, Morocco, 2003.
C. Costa, A. Silva, J. L. Oliveira, A. S. Pereira, and V. Ribeiro, "A New Concept for an Integrated Healthcare Access Model", in Medical Informatics Europe (MIE'2003), Saint Malo, France, 2003.
C. Costa, J. L. Oliveira, A. Silva, and V. Gama, "An Integrated Access Interface to Multimedia EPR", in 21st International EuroPACS Meeting (EuroPACS'2003), London, United Kingdom, 2003.
C. Costa, J. L. Oliveira, and A. Silva, "Authentication Model to Enforce Network Entities Identification", in 4rd Conference on Telecommunications (ConfTele'2003), Aveiro, Portugal, 2003.
C. Costa, J. L. Oliveira, and A. Silva, "A User-Oriented Model to Manage Multiple Digital Credentials", in IEEE 5th International Conference on Enterprise Information Systems (ICEIS'2003), Angers, France, 2003.
C. Costa, J. L. Oliveira, and A. Silva, "Critical Information Systems Authentication based on PKC and Biometrics", in International Conference on Web Engineering (ICWE'2003), Lecture Notes in Computer Science - Volume 2722 / 2003, Oviedo, Spain, 2003.
C. Costa, J. L. Oliveira, and A. Silva, "Electronic Patient Record Virtually Unique based on a Crypto Smart Card", in International Conference on Web Engineering (ICWE'2003), Lecture Notes in Computer Science - Volume 2722 / 2003, Oviedo, Spain, 2003.
V. Silva, J. A. Fonseca, and J. L. Oliveira, "Java Environment for a JUMPtec WebtoNet Embedded System", in Satellite Workshop of on Java in Embedded Systems (ARCS'2002), Karlsruhe, Germany, 2002.
T. Silva and J. L. Oliveira, "Interfaces de voz para a Web", in Conferência Científica e Tecnológica em Engenharia (CCTE'2002), Lisbon, Portugal, 2002.
V. Silva, J. A. Fonseca, and J. L. Oliveira, "Ambiente Java para Sistemas Integrados de Recursos Limitados", in Conferência Científica e Tecnológica em Engenharia (CCTE'2002), Lisbon, Portugal, 2002.
V. Silva, J. A. Fonseca, J. L. Oliveira, and A. Mota, "Using Java Language for Control Algoritms", in 5th Portuguese Conference on Automatic Control (Controlo'2002), Aveiro, Portugal, 2002.
J. C. Santos, J. L. Oliveira, and C. Costa, "A User-oriented Multi-service Access Control System", in 5ª Conferência sobre Redes de Computadores (CRC'2002), Faro, Portugal, 2002.
R. P. Lopes and J. L. Oliveira, "A Uniform Resource Identifier Scheme for SNMP", in IEEE Workshop on IP Operations and Management (IPOM'2002), Dallas, USA, 2002.
R. P. Lopes and J. L. Oliveira, "Multi-Management Schemes for MAF Platforms", in International Workshop on Mobile Agents for Telecommunications Applications (MATA'2002), Barcelona, Spain, 2002.
R. P. Lopes and J. L. Oliveira, "Esquema de Identificação Uniforme de Recursos SNMP", in 5ª Conferência sobre Redes de Computadores (CRC'2002), Faro, Portugal, 2002.
R. P. Lopes and J. L. Oliveira, "A Multi-protocol architecture for SNMP entities", in IEEE Workshop on IP Operations and Management (IPOM'2002), Dallas, USA, 2002.
T. Silva, J. L. Oliveira, N. P. Rocha, and P. Trigueiros, "Falar com a Web - Um Caso de Estudo", in 4ª Conferência sobre Redes de Computadores (CRC'2001), Covilhã, Portugal, 2001.
V. Silva, J. L. Oliveira, and J. A. Fonseca, "Ambiente de Execução de Aplicações Java para Sistemas de Recursos Limitados", in 4ª Conferência sobre Redes de Computadores (CRC'2001), Covilhã, Portugal, 2001.
J. L. Oliveira and R. Aguiar, "QoS Negotiation Based on Management Delegates", in IEEE Third International Conference on Enterprise Information Systems (ICEIS'01), Setúbal, Portugal, 2001.
R. P. Lopes and J. L. Oliveira, "SNMP Management of MASIF Platforms", in IEEE/IFIP International Symposium On Integrated Network Management Proceedings (IM'2001), Seattle, USA, 2001.
R. P. Lopes and J. L. Oliveira, "Distributed Management of Mobile Components", in 3rd Conference on Telecommunications (ConfTele'2001), Figueira da Foz, Portugal, 2001.
R. P. Lopes and J. L. Oliveira, "A New Mechanism for Distributed Managers Persistence", in IEEE Third International Conference on Enterprise Information Systems (ICEIS'2001), Setúbal, Portugal, 2001.
C. Costa, J. L. Oliveira, and A. Silva, "A Trusted Brokering Service for PKI Interoperability and Thin-Clients Integration", in IEEE Third International Conference on Enterprise Information Systems (ICEIS'2001), Setúbal, Portugal, 2001.
C. Costa, J. L. Oliveira, and A. Silva, "Um Novo Mecanismo de Autenticação para Sistemas de Informação Clínica", in 4ª Conferência sobre Redes de Computadores (CRC'2001), Covilhã, Portugal, 2001.
C. Costa, J. L. Oliveira, and A. Silva, "Engenharia de Segurança em Sistemas de Informação Clínica", in 2º Congresso Luso Moçambicano de Engenharia, Maputo, Mozambique, 2001.
S. Santana, J. L. Oliveira, and H. Diz, "Capturing Knowledge Through Software Agents", in International Conference on Advances in Infrastructure for Electronic Bussiness, Science, and Education on the Internet (SSGRR'2000), L'Aquila, Italy, 2000.
J. L. Oliveira, R. Aguiar, and R. P. Lopes, "Integration of Service, Network and System Management: Current and Forthcoming Trends", in 4th World Multiconference on Systemics, Cybernetics and Informatics (SCI'2000), Orlando, USA, 2000.
J. L. Oliveira and R. Aguiar, "Network and Desktop Management Convergence", in IEEE 33rd Hawaii International Conference on System Sciences (HICSS'33), Hawaii, USA, 2000.
R. P. Lopes and J. L. Oliveira, "On the Use of Mobility in Distributed Network Management", in IEEE 33 rd Hawaii International Conference on System Sciences (HICSS'33), Hawaii, USA, 2000.
R. P. Lopes and J. L. Oliveira, "Managing Mobile Agents with SNMP", in Simposio Espanhol de Informática Distribuida (SEID'2000), Ourense, Spain, 2000.
R. P. Lopes and J. L. Oliveira, "Distributed Management: Implementation Issues", in International Conference on Advances in Infrastructure for Electronic Bussiness, Science, and Education on the Internet (SSGRR'2000), L'Aquila, Italy, 2000.
R. P. Lopes and J. L. Oliveira, "Descrição e Implementação de uma MIB para Sistemas MASIF", in 3ª Conferência sobre Redes de Computadores (CRC'2000), Viseu, Portugal, 2000.
R. P. Lopes, "The SNMP Evolution: Lost on Simplicity or on Functionality", in 4th World Multiconference on Systemics, Cybernetics and Informatics (SCI'2000), Orlando, USA, 2000.
A. Fonte and J. L. Oliveira, "Avaliação das Potencialidades de CORBA como Infra-Estrutura de Gestão de Redes." in 3ª Conferência sobre Redes de Computadores (CRC'2000), Viseu, Portugal, 2000.
J. L. Oliveira and R. P. Lopes, "Distributed Management based on Mobile Agents" in MATA'99, A. Karmouch and R. Impey, Eds.: Word Scientific, 1999, pp. 243-258.
J. A. Martins, N. P. Rocha, J. L. Oliveira, and J. S. Pinto, "Learning and Teaching Data Communications Basic Concepts through the Implementation of a Simulador for the HDLC Protocol" in Combelet'99, 1999.
R. Aguiar and J. L. Oliveira, "New Services on an Advanced Internet" in Multimedia Applications, Services and Techniques - ECMAST'99, H. Leopold and N. García, Eds.: Springer, 1999, pp. 197-211.
V. Roque and J. L. Oliveira, "Corba, DCOM e JavaRMI", in Encontro de Engenharia Informática 99 - Ordem dos Engenheiros (EEI'99), Braga, Portugal, 1999.
J. L. Oliveira, R. P. Lopes, R. Aguiar, and L. F. Lobo, "Gestão de Sistemas: Problemas e soluções baseados em casos de estudo", in Encontro de Engenharia Informática 99 - Ordem dos Engenheiros (EEI'99), Braga, Portugal, 1999.
J. Mota, J. L. Oliveira, and F. Ramos, "A Remote Meteorological Data Services Supported on CORBA", in 1st International Conference on Enterprise Information Systems (ICEIS'99), Setúbal, Portugal, 1999.
R. P. Lopes and J. L. Oliveira, "Software Agents in Network Management", in 1st International Conference on Enterprise Information Systems (ICEIS'99), Setúbal, Portugal, 1999.
R. P. Lopes and J. L. Oliveira, "Implementação e Avaliação de Gestão remota sobre DISMAN", in 2ª Conferência sobre Redes de Computadores (CRC'99), Évora, Portugal, 1999.
R. Aguiar, J. L. Oliveira, A. Richardson, and D. O'Sullivan, "The Internet: Source of expectations", in Third European Workshop on Techno-Economics for Multimedia Networks and Services (TERA'99), Aveiro, Portugal, 1999.
R. Aguiar and J. L. Oliveira, "Issues on Internet Evolution and Management", in 1st International Conference on Enterprise Information Systems (ICEIS'99), Setúbal, Portugal, 1999.
J. L. Oliveira and N. P. Rocha, "A Longitudinal Study about the Education of Information Engineering", in Enhancement of Education in Electrical and Informational Engineering (EAEEIE'98), Lisbon, Portugal, 1998.
J. L. Oliveira and N. P. Rocha, "Reflexões sobre a Leccionação de Informática no Ensino Universitário", in IV Congresso da Sociedade Portuguesa de Ciências da Educação, Aveiro, Portugal, 1998.
R. Martins, S. Bernardo, and J. L. Oliveira, "NetAdmin - Interface Web para HP OpenView", in 1ª Conferência sobre Redes de Computadores (CRC'98), Coimbra, Portugal, 1998.
N. P. Rocha, L. M. Pereira, C. Cidade, J. L. Oliveira, and J. Pavão, "Videotelephony and Support Services", in 3rd Malaysia International Conference On Communications (MICC'97), Kuala Lumpur, Malaysia, 1997.
N. P. Rocha, J. L. Oliveira, L. M. Pereira, and C. Cidade, "Broadband Videotelephony Supporting Services for Disable and Elderly People", in 15th IASTED International Conference on Applied Informatics, Innsbruck, Austria, 1997.
J. L. Oliveira and N. P. Rocha, "Towards Management Frameworks on Broadband Networks", in 3rd Malaysia International Conference On Communications (MICC'97), Kuala Lumpur, Malaysia, 1997.
J. A. Martins and J. L. Oliveira, "Scheduling and Processing Network Management Operations", in 15th IASTED International Conference on Applied Informatics, Innsbruck, Austria, 1997.
R. P. Lopes and J. L. Oliveira, "An Approach to Self-Management Based on Automatic Diagnostics", in 3rd Malaysia International Conference On Communications (MICC'97), Kuala Lumpur, Malaysia, 1997.
N. P. Rocha, J. L. Oliveira, L. M. Pereira, and E. Saragoça, "Enabling Computer Applications in Residential Environments", in The 19th Convention of Electrical and Electronics Engineers in Israel,, Jerusalem, Israel, 1996.
J. L. Oliveira and J. A. Martins, "Framework for the Development and Integration of Management Applications", in Summer School on Telecommunications Services (Eunice'96), Lausanne, Suisse, 1996.
J. L. Oliveira and J. A. Martins, "A Management Application Programming Interface", in Fifth IFIP/IEEE International Workshop on Distributed Systems: Operations & Management (DSOM'94), Toulouse, France, 1994.
J. L. Oliveira and J. A. Martins, "A Methodology to Represent Logical Network Topology Information", in IEEE/IFIP Network Operations and Management Symposium (NOMS'94), Orlando, USA, 1994.
J. L. Oliveira and J. A. Martins, "Management of PACS Resources", in 11th International EuroPACS Meeting (EuroPACS'93), Rennes, France, 1993.
N. P. Rocha, A. Carvalho, and J. L. Oliveira, "Defining Managed Objects for Integrated Management System with Monitoring Agents", in ERCIM Workshop on Network Management, Crete, Greece, 1992.
J. L. Oliveira and J. A. Martins, "A Descriptive Language For Network Topologies", in ERCIM Workshop on Network Management, Crete, Greece, 1992.
N. P. Rocha, A. Agapito, J. L. Oliveira, P. G. Oliveira, and A. P. Alves, "High Speed Backbone Concentrator", in 6th Mediterranean Electrotechnical Conference (Melecom'91), Ljubljana, Slovenia, 1991.
J. A. Martins, N. P. Rocha, J. L. Oliveira, J. S. Pinto, and C. Toscano, "Integrated Management System for interconnected Local Area Networks", in 6th Mediterranean Electrotechnical Conference (Melecom'91), Ljubljana, Slovenia, 1991.
J. S. Pinto, J. L. Oliveira, and J. A. Martins, "PC Workstation for Ethernet Monitoring and Management", in SBT/IEEE International Telecommunications Symposium (ITS'90), Rio de Janeiro, Brasil, 1990.
J. A. Martins, J. S. Pinto, and J. L. Oliveira, "Measuring, Characterizing and Generating LAN Traffic", in IEEE International Conference on Communications Systems (ICCS'90 ), Singapure, 1990.

Conferences (Posters)

M. C. Santos, M. Pinheiro, J. L. Oliveira, and M. A. S. Santos, "Comparative tRNomics of a genetic code alteration", in ESF-EMBO Symposium on Comparative Genomics of Eukaryotic Microorganisms: Eukaryotic Genome Evolution, Sant Feliu de Guixols, Spain, 2007.
A. Freitas, V. Afreixo, M. Pinheiro, J. L. Oliveira, G. Moura, and M. A. S. Santos, "A median-based iterative signature algorithm", in XI Conferencia Española y I Encuentro Iberoamericano de Biometría, Salamanca, Spain, 2007.
M. Pinheiro, G. Moura, A. Freitas, M. A. S. Santos, and J. L. Oliveira, "A bioinformatics system to analyze sequences at a genomic scale", in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
G. Moura, M. Pinheiro, C. Gomes, A. Freitas, J. L. Oliveira, and M. A. S. Santos, "Large Scale Comparative Codon Context Analysis Unveils Novel Rules Governing Gene Evolution", in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
J. P. Lousado, G. Moura, M. Pinheiro, J. L. Oliveira, and M. A. S. Santos, "Large Scale Comparative Genomics of Codon Context", in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
S. Lima, E. Fonseca, J. L. Oliveira, and C. Egas, "Computational Methodologies for Metagenomics Projects", in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
C. Gomes, G. Moura, A. C. Gomes, J. L. Oliveira, M. Pinheiro, A. Freitas, and M. A. S. Santos, "The role of codon context on mRNA decoding error in vivo in yeast", in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
A. Freitas, L. Ferreira, J. Duarte, M. Pinheiro, J. L. Oliveira, G. Moura, and M. A. S. Santos, "Homo Sapiens Vs Pan Troglodytes: How Diferent Are They?" in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
C. Egas, J. L. Oliveira, M. A. S. Santos, M. S. Costa, and C. Faro, "Whole Genome shotgun mapping of Rubrobacter radiotolerans", in XVth National Congress of Biochemistry (NBC 2006) (Invited talk), Aveiro, Portugal, 2006.
L. Carreto, P. Pereira, J. Arrais, J. L. Oliveira, and M. A. S. Santos, "National Facility For DNA Microarrays", in XVth National Congress of Biochemistry (NBC 2006) (Invited talk), Aveiro, Portugal, 2006.
J. Arrais, J. L. Oliveira, G. Campos, L. Carreto, and M. A. S. Santos, "Microarray data: from the hybridisation to the analysis", in European Summer School in Biomedical Informatics, Balatonfüred, Hungary, 2006.
J. Arrais, L. Carreto, M. A. S. Santos, and J. L. Oliveira, "Collaborative work on microarrays using MAGE-ML", in 9th International Meeting of the Microarray Gene Expression Data Society (MGED9), Seattle, Washington, USA, 2006.
J. Arrais, L. Carreto, H. Pais, F. Lopes, M. A. S. Santos, and J. L. Oliveira, "A Laboratory Information Management System for Microarray Data Storage, Sharing and Analysis", in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
P. R. Almeida, L. Carreto, J. L. Oliveira, and M. A. S. Santos, "Software-Assisted Design of Probes for SNPs Detection using Oligonucleotide Microarrays: Applications in a Case Study", in XVth National Congress of Biochemistry (NBC 2006) Aveiro, Portugal, 2006.
L. Carreto, M. C. Santos, J. Arrais, M. Rodrigues, L. Silva, J. L. Oliveira, and M. A. S. Santos, "Implementation of a National Facility for DNA Microarrays in Portugal", in 8th International Meeting of the Microarray Gene Expression Data Society (MGED8), Bergen, Norway, 2005.
M. Pinheiro, V. Afreixo, G. Moura, A. Freitas, M. A. S. Santos, and J. L. Oliveira, "Bioinformation System for Unveil General Rules of Codon Context", in XIV Congresso Nacional de Bioquímica, Vilamoura, Portugal, 2004.
M. Pinheiro, V. Afreixo, G. Moura, G. Dias, A. S. Pereira, A. Valente, M. A. S. Santos, and J. L. Oliveira, "Bioinformation system and statistical methodologies for gene primary structure analysis", in EuroMISE 2004, Prague, Czech Republic, 2004.
J. L. Oliveira, M. Pinheiro, M. A. S. Santos, H. Rocha, M. L. Cardoso, and L. Vilarinho, "On the Processing of MS/MS Data: an Application for Metabolic Diseases Screening", in XIV Congresso Nacional de Bioquímica, Vilamoura, Portugal, 2004.
G. Moura, M. Pinheiro, V. Afreixo, A. Valente, J. L. Oliveira, and M. A. S. Santos, "Comparative codon context analysis at a genomic scale defines new mRNA decoding rules", in Translational Control Meeting, Cold Spring Harbor, New York, 2004.
G. Moura, M. Pinheiro, V. Afreixo, A. Valente, J. L. Oliveira, and M. A. S. Santos, "Genome scale codon context analysis for Saccharomyces cerevisiae and Candida albicans." in XII Jornadas de Biologia de Leveduras (Leveduras'2004), Aveiro, Portugal, 2004.
G. Moura, M. Pinheiro, V. Afreixo, A. Freitas, J. L. Oliveira, and M. A. S. Santos, "Comparative codon context analysis in complete genomes unveils new decoding rules in yeast", in XIV Congresso Nacional de Bioquímica, Vilamoura, Portugal, 2004.
L. Carreto, J. Pereira, J. L. Oliveira, A. S. Pereira, V. Afreixo, A. Valente, and M. A. S. Santos, "Implementation of a DNA-microarray platform for yeast expression, genome diversity and evolution and molecular diagnostics research." in XII Jornadas de Biologia de Leveduras (Leveduras'2004), Aveiro, Portugal, 2004.
J. L. Oliveira, M. Pinheiro, G. Dias, G. Moura, V. Afreixo, A. Valente, A. S. Pereira, and M. A. S. Santos, "New software tools for gene analysis", in ESF Programme in Functional Genomics: 1st European Conference (ESFFG'2003), Prague, Czech Republic, 2003.
J. L. Oliveira, G. Dias, R. Silva, and M. A. S. Santos, "An open environment for management of proteomics data and projects", in ESF Programme in Functional Genomics: 1st European Conference (ESFFG'2003), Prague, Czech Republic, 2003.
I. Oliveira, A. Furtado, J. L. Oliveira, A. S. Pereira, V. Maojo, F. Martin-Sanchez, A. Babic, and M. Santos, "Integration of Genetic and Clinical Information Sources for Health Applications", in ESF Programme in Functional Genomics: 1st European Conference (ESFFG'2003), Prague, Czech Republic, 2003.

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